Refuge Series by Mareel
This is a series set mostly in ENT Season 3, but which continues (AU to Season 4) after "Stormfront". It began as a series of drabbles and double drabbles in canon with one another, but sometimes the guys weren't in a mood to distill their thoughts to fit a particular format. There are some ficlets and a longer piece or two. Long incomplete, the missing Part 15 is finally finished as "How Far from Morning."
1. Refuge
The world changes, but love endures and sustains. [PG-13]
Malcolm tries to get past "Captain Archer" to reach Jonathan. [PG-13]
3. Respite
Jon and Malcolm reconnect amid the stress of the Expanse. [PG-13]
Jon and Malcolm recollect the vows they made to one another before this mission. [G]
Nightmares, role-reversals, and an old lullabye. Jon and Malcolm look at what they need from their relationship, and what they find in it. [PG-13]
Waiting and hoping are the whole of life... [G]
7. When Winds of Changes Shift
Jonathan and Malcolm consider choices in the past and for the future. [G]
8. Cherish, Respect, Shelter, Defend
"It should have been me." [G]
Remembering a word, a touch. [G]
10. Held Constant
"Although I've travelled far... I always hold a place for you in my heart" (T. Chapman) [G]
Guilt, grief, hope... home [PG-13]
Coming home. [R]
13. Sanctuary
It's over... and both understand the costs. [PG]
14. Adrift
Both have seen too much. [R]
Yesterdays and tomorrows... the personal aftermath of the Xindi mission [NC-17] ~7500 words
16. Home
A private interlude... a bottle of wine... and a surprise or two for Jon [NC-17] ~6500 words